Long read based human genomic structural variation detection with cuteSV
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Updated
May 31, 2024 - Python
Long read based human genomic structural variation detection with cuteSV
PEPPER-Margin-DeepVariant
Nanopore sequence read simulator
CLI tool for flexible and fast adaptive sampling on ONT sequencers
Technology agnostic long read analysis pipeline for transcriptomes
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome
De novo clustering of long transcript reads into genes
Predict plasmids from uncorrected long read data
SNP-Assisted SV Calling and Phasing Using ONT
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
Quality control plotting for long reads
Wrapper to read fast5, slow5, blow5 and pod5 files.
Long sequencing reads classifier
An awesome Oxford Nanopore Pipeline for direct RNA-sequencing
simON-reads ("Simulate Oxford Nanopore Reads") is a simple yet powerful tool to generate fastq files containing MiniON-like long reads
Nextflow pipeline to process SARS-CoV-2 genomes by Nanopore Sequencing using ARTIC (https://github.com/artic-network/fieldbioinformatics) tools
A pipeline for variant calling from P. falciparum short reads generated from Illumina and ONT libraries
A novel ML-based binary classifier to tell viral and non-viral long reads apart in metagenomic samples.
This workflow uses Dorado, Samtools, Clair3, WhatHap and Modkit to extract a modification count table containing information for each relevant site.
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