Benchmarking uncertainty quantification methods on proteins.
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Updated
Aug 4, 2023 - Shell
Benchmarking uncertainty quantification methods on proteins.
Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS
Fungal Secreted Proteins (or Secretome) Predictor Pipeline
Shell script to prepare protein PDBs for GROMACS molecular dynamics simulations, with SLURM script included to run md with hpc
Convert PDBX/mmCIF Protein Structures to PNG Images using Shell Script and Jmol.
Reads protein functional associations (e.g. from STRING-DB) and finds direct (0-hops) or indirect (1,2-hops) protein-links between a pair of proteins (C/C++).This work was done while working at the Institute of Cancer Research in London in association with people from the Erler Lab.
Coiled-coil Crick Paramaterization PDB modifier for further design
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