Tools to scrape publication metadata from pubmed, arxiv, medrxiv and chemrxiv.

A Python tool for systematic review scraping PubMed articles based on specified search queries.

Enhance your knowledge in medical research with the help of LLM and RAG.

PubMed PDF Downloader is a Python application that allows users to search for scientific articles on PubMed, download their PDFs, and save them locally. The application provides both a graphical user interface (GUI) and a command-line interface (CLI) for ease of use.

本项目存放自动化数据处理的一些脚本，大家需要自取。爬取并比对QI&HMDB中的数据，爬取pubmed文献。

An open platform which provides information about miRNAs and genes from different popular databases

naive index and query scripts for free reference bioinformatics datasets

It's time to sift through some articles 🤭

tair id to pubmed links for articls, genes, annotations, locus tag

analyzing pubmed articles for natural language processing.

a langchain literature miner from pubmed

Toolkits for NCBI Pubmed

A text mining tool for developing visual and interactive relationship networks from PubMed article information.

A Python package to download full article PDFs from OA publications

A lightweight Biopython-based interface to NCBI's Entrez API, created to speed up systematic literature reviews

PubMed-FAST-Scrape is a Python package intended for Biomedical NLP scientists. Offers x200 faster scraping than otherwise. It enables researchers and data scientists to easily gather articles based on a field of interest, year range, and minimum number of citations.

pubid2bib (Publication Identifier to BibTeX) creates BibTeX bibliographic entries for publication identifiers

Turbocharge a PubMed literature rather than clicking and clicking and clicking on Google Scholar

PyMedX is a Python library that provides access to PubMed.