analysis of PubMed data

webpage crawling tools for pubmed, google scholar and rss

This Shiny web app provides information updated daily on scientific papers related to the COVID-19 virus. The data is extracted from PubMed, a free search engine accessing primarily the MEDLINE database of references and abstracts on life sciences and medical topics.

App for searching gene or keyword which associated with arbitrary pubmed search

Getting some data from a database and then search for them on a search engine.

Companion code for http://amunategui.github.io/pubmed-query/

Text mining for cardiac Single-Cell research articles in PubMed database

Data mining for NCBI genes

Motors in Quarantine attendees compared to global research output on Motors

An R package for downloading the data for, creating, and querying a database of PubTator annotation files.

Shiny App to visualize how the ratio of the number of articles returned by two different Pubmed queries varies with time

Extract the country names from Pubmed affiliations and visualize the extent of worldwide collaborations among researchers.

shinyPubMed allows users to search and visualize PubMed article abstracts based on specific search terms and a date range.

Analysing acronyms and initialisms in pubmed data

📕A Comprehensive Medical Journal Abbreviation Database for Citation Purposes

An app for myself to search PubMed literature

webpage crawling tools for pubmed, google scholar and rss

Parse PubMed XML into a data frame in R

Code used to extract and analyse gender data from PubMed and arXiv in 2018 PLOS Biol paper

Sample code and explanations for doing basic text mining tasks in R