Platform for integrating genomic analysis with Jupyter Notebooks.

GPU-Jupyter: Leverage the flexibility of Jupyterlab through the power of your NVIDIA GPU to run your code from Tensorflow and Pytorch in collaborative notebooks on the GPU.

Ten Simple Rules for Writing and Sharing Computational Analyses in Jupyter Notebooks

Examples for paper: "Ten Simple Rules for Reproducible Research with Jupyter Notebooks"

SEA ISS 2024: Notebook Submission Template Resources

Library to support combining jupyter notebooks and pydoit

FAIR for Jupyter Notebooks - A Practical Guide

Manage your Computational Notebook Collections with Scikick

Reproduce Jupyter Notebooks inside Docker Containers.

TPU Container Integration for Jupyter Notebook & TensorFlow

The aim of this practical course is to start from a simple deep learning model implemented in a notebook, and port it to a ‘reproducible’ world by including code versioning (Git), data versioning (DVC), experiment logging (Weight & Biases), hyper-parameter tuning, configuration (Hydra), and ‘Dockerization’.

A brief introduction to translate economic analysis in Stata into computational, reproducible and interactive notebooks.

Pandoc filter for publishing code notebooks

NGSeminar on the use of Jupyter and R notebooks in biomedical research

📓Notebook materials for the RSE conference workshop (2017)

Notebooks from my PhD thesis

This repository contains jupyter-notebooks that refer to my paper summaries.

Special Issue: The Potential of Notebooks for Scientific Publication: Reproducibility, and Dissemination

📓 Code for "Fluctuation Domains in Adaptive Evolution", published in TPB

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