query stats of infected coronavirus cases

Unified COVID-19 Dataset

Programmatically interact with the GISAID database.

R package to obtain and analyze live data from the nCOVID19 coronavirus

Analysis and visualization of Taiwan’s COVID-19 data

Interoperable secondary data for research on the new COVID-19 coronavirus sars-cov-2

🦠 Exploring COVID-19 data

This is the raw data and code repository of the SARS-ANI project on SARS-CoV-2 events in animals.

Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nature Communications (2022).

Supplementary scripts for Nelson et al. (2020) paper on ORF3d

Data analysis for single-cell RNA-seq of BAL macrophages & stimulated monocytes

An infectious disease kinetics model of SARS-CoV-2 virus infection in humans with population migrating details for predicts the plague progress in a administrative divislon.

Data used for analyses in "Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China" (Lu et al., Cell, 2020) https://doi.org/10.1016/j.cell.2020.04.023

ViReMaShiny is an R Shiny application that allows for quick analysis of viral recombination data from the ViReMa pipeline.

Datos y análisis cobre el COVID-19 en México. https://coronamex.github.io

Code and Data from our SARS-CoV-2 manuscript

COVID-19 mortality risk assessment among various age groups using phylogenomic analysis

⚔️🏰 Pipeline for sequencing of SARS-CoV-2 on local workstations with realtime (ONT) basecalling

Codes for SARS-CoV-2-human contactome

Translate and Illustrate SARS-CoV-2 Pango Lineages