SBML (the Systems Biology Markup Language) is an XML-based format for communicating and storing representations of biological processes. Its aim is to be a lingua franca for representing models in biology. SBML is suitable for models commonly found in research on a number of topics, including cell signaling pathways, metabolic pathways, biochemical reactions, gene regulation, and many others.
LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (SBML). It offers language bindings for C, C++, C#, Java, JavaScript, MATLAB, Perl, PHP, Python, R and Ruby.
Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
Spatial bio-chemical reaction model editor and simulator
Spatial Model Simulator with SBML Model
Design Explorer and Viewer for Iterative SBML Enhancement of Representations
libSBNW is a network viewer which supports autolayout of reaction networks and uses libSBML for reading/writing models.
Tests for infix-to-mathML and mathML-to-infix for both libsbml and jsbml.