MMseqs2: ultra fast and sensitive search and clustering suite

Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

MeShClust: an intelligent tool for clustering DNA sequences

This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.

MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences

Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab

Cluster up to millions of peptide sequences on shared sequence motifs.

Code to reproduce the experiments and the proposed visualization from 'Data mining in the development of mHealth apps: assessing in-app navigation through Markov Chain analysis'

CD HIT cluster file parser

Dereplicate long sequences

Protein Clustering

Gene download from NCBI database, sequence alignment and clusterization, realization of different bioinformatics algorithms within ITMO 4 sem course