A simple Snakemake profile for Slurm without --cluster-config

Slurm in Docker - Exploring Slurm using CentOS 7 based Docker images

A template for starting reproducible Python machine-learning projects with hardware acceleration. Find an example at https://github.com/CLAIRE-Labo/no-representation-no-trust

Contains example recipes that demonstrate how to build HPC systems using AWS services and solutions.

🔬 Collection of the Finnish Grid and Cloud Infrastructure Ansible playbooks

Scripts to facilitate parallel InSAR processing and analysis of Sentinel-1 time series on HPC clusters based on GMTSAR and Slurm.

Monitoring Dashboard for AWS ParallelCluster

Docker compose to bring up Open OnDemand with SLURM, Centos 7

Scripts to customize AWS ParallelCluster

Container-based Slurm cluster with support for running on multiple ssh-accessible computers. Currently it is based on podman, systemd, norouter and sshocker (sshfs).

A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)

Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler

All the submission scripts used for my work on Jean Zay and the TGCC

Simple High performance Infrastructure for Neural network Experiments

(DEPRECATED) A set of launcher scripts to be used with OAR and Slurm for running jobs on the UL HPC platform

Find Best SLURM Partition to Run a Job

This project provides provisioned HPC cluster models using underlying virtualization mechanisms.

CeMM's Snakemake SLURM cluster profile

Scripts for MRI preprocessing

Create and manage Amazon SageMaker HyperPod clusters, run distributed model training