A database for signatures of public genomic sources
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Updated
Jun 26, 2024 - Python
A database for signatures of public genomic sources
Quickly search, compare, and analyze genomic and metagenomic data sets.
fast, multithreaded sourmash operations: search, compare, and gather.
Explore microbial contamination in human whole-genome shotgun data sets, using sourmash
Use sourmash to sketch the human genome (hg38), incl all unmapped chromosomes.
Searching large collections of sequencing data with genome-scale queries
Project template for sourmash-based characterization of genomes and metagenomes
Remove contaminated contigs from genomes using k-mers and taxonomies.
MetaQuest is a robust and user-friendly command-line toolkit designed to simplify and streamline the analysis of metagenomic data. From summarizing the presence of specific genomes to visualizing complex datasets, MetaQuest offers an array of tools to help researchers uncover insights from their metagenomic datasets.
Benchmarking etc code for https://dib-lab.github.io/2022-paper-branchwater-software/
Workflow and config files for searching (very) large public databases with sourmash sketches
Add a description, image, and links to the sourmash topic page so that developers can more easily learn about it.
To associate your repository with the sourmash topic, visit your repo's landing page and select "manage topics."