A Python-based module for creating flexible and robust spike sorting pipelines.
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Updated
May 14, 2024 - Python
A Python-based module for creating flexible and robust spike sorting pipelines.
Fast spike sorting with drift correction for up to a thousand channels
Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.
Fast and scalable spike sorting in python
YASS: Yet Another Spike Sorter
Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.
Automatic spike sorting, cluster visualization, spike sorting GUIs
Python-based module with spike sorter wrappers and a simple API for running them.
A GUI for running popular spike sorting algorithms on extracellular data of any file format.
a graphical tool for generating hybrid ground-truth spiking data for evaluating spike sorting performance
Offline real time (ort) implementation of SpyKING CIRCUS
Python Implementation of GLMCC (generalized linear model for spike cross-correlations)
Neural spike sorting algorithm based on iso-cut clustering and template matching in raw voltage space for the detection of near-simultaneous spike events.
A reproducible document with an extended version of SPySort: Neuronal Spike Sorting with Python Proceedings of the 7th European Conference on Python in Science (EuroSciPy 2014), edited by Pierre de Buyl and Nelle Varoquaux, pp. 27–34.
OSSA (Open-Source Sorting Algorithm) is an interactive software for manual curation of neural spikes.
Automatic and manual spike sorting based on SpikeInterface
A study of how autoencoders fare in the domain of Spike Sorting. Various autoencoder architectures have been tested.
An automated, end-to-end, machine-learning-based spike sorting pipeline following the DeepCluster method
Converts moutainsorted clusters to phy for curation using SpikeInterface. Includes a plugin to add mountainsort cluster metrics to phy.
Spike Cluster Score (SCS) is a clustering performance metric designed with the purpose of spike sorting in mind.
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