A dependency-free cross-platform swiss army knife for PDB files.
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Calculation of interatomic interactions in molecular structures
The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..
Script to facilitate the making of horizontal scripts
Partner specific prediction of protein binding sites
Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.
Benchmarking common tasks on proteins in various languages and packages
PACKMAN: PACKing and Motion ANalysis
collect statistics from the entire PDB library
Python package to manage protein structures and their annotations
A tool to visualise the results of AlphaFold2 and inspect the quality of structural predictions
Extract PDB entries annotated with specific GO codes
Visualizing the effect of SNPs on protein structure using iCn3D
A Python framework for structural bioinformatics.
MD-ligand-receptor is a bioinformatics pipeline written in Python for analyzing non-covalent ligand-receptor interactions in 3D structures starting from a molecular dynamic trajectory.
Protein-Protein Docking using Genetic Algorithm
PointNet for Deep Rank: protein-protein interaction scoring using neural networks
Convert between PDB and CIF formats
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