Tandem repeat expansion detection or genotyping from long-read alignments
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Updated
Sep 26, 2024 - Python
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tandem-repeats
Here are 8 public repositories matching this topic...
Toolkit for VNTR genotyping and repeat-pan genome graph construction
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Sep 4, 2024 - Python
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Apr 29, 2024 - Python
WebSTR-API: programmatic access to WebSTR, database of Human genome-wide variation in Short Tandem Repeats (STRs)
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Aug 6, 2024 - Python
A python library for decomposing and visualizing tandem repeat sequences
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Feb 23, 2024 - Python
nPoRe: n-Polymer Realigner for improved pileup-based variant calling
nanopore
genomics
alignment
variant-calling
tandem-repeats
copy-number-variation
long-reads
ont-data
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Updated
Jul 11, 2022 - Python
Targeted characterisation of short structural variation.
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Jan 12, 2022 - Python
TRAL pipeline for tandem repeat detection in proteins. Specifically in such which are related to colorectal cancer.
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Updated
Nov 22, 2019 - Python
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