[KTH/HT17] BB2491 - Analysis of Data from High-throughput Molecular Biology Experiments (BigData) | Diary: cf. wiki

Useful scripts and code snippets for transcriptomics

Personalized Regression

Scaling structural learning with NO-BEARS

Genome-wide investigation of non-canonical splice sites

CAARS: Comparative Assembly and Annotation of RNA-Seq data

Get exons from a transcriptome and raw genomic reads using abyss-bloom and bedtools

hclust_mix is a Python script that allows the identification of attractor states from gene expression matrices using Hopfield neural networks.

Data analysis pipeline used for the assembly and differential abundance analysis of M. rosenbergii transcriptome in response to MrNV infection

(formerly eelpond) an automated RNA-Seq workflow system

Python library to perform memory efficient cross-sample cell mapping using single cell transciptomics (scRNA-Seq) data

Website to explore predicted planarian protein-protein interactions.

Pipeline for annotating genomes using long read transcriptomics data with pinfish

Bioinformatic data mining pipeline used in my college research project. https://www.mdpi.com/2223-7747/10/8/1647/htm#

This is a prototype of the first fully functionalities telemedicine platform that integrates omics, it's started as a platform for managing the data of the pandemic, including genomics data of the virus and the host, and using them for creating AI tools. The complete version of this platform will serve as a model for any future epidemic situatio…

Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:

gtf conversion utlity

MIREyA is a tool for detection of miRNAs and their gene targets up-regulated through triggering their enhancer in the provided expression dataset

Generative models for transcriptomics profiles and proteins