🧬 gget enables efficient querying of genomic reference databases

Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities

From taxonomic affiliations to annotated proteins using UniProt database.

Find all PDBs associated with a UniProt entry.

Access to Biological Web Services from Python.

Efficient querying of biological databases

The Amissense Tool analyzes and visualizes AlphaMissense pathogenicity scores, integrating AlphaFold structures and ClinVar data. It offers automated pipelines, visualizations, and versatile command-line utilities.

ProtGraph - A Graph-Generator for Proteins

MOLeculAR structure annoTator

UniProt Id Mapping through API

BBS Project developed by Ronald Pardo, Ana Sofia Villa and Gabriela Moreno for the course of EBI tools @ Universidad de los Andes 2024-02.

naive index and query scripts for free reference bioinformatics datasets

This UniProt Protein Parser is a tool that parses data from an input file containing multiple UniProt records and generates an output `.txt` file, which contains useful information for each protein including their IDs, amino acid sequences and transmembrane segment positions.

🧬 Seja bem-vindo ao Repositório de Algoritmos em Bioinformática! Aqui você encontrará materiais e exercícios do curso ministrado no 1º semestre de 2024 na UNIFESP (Universidade Federal de São Paulo).

Robust and replicable information system for exploring protein metamorphisms.

Alpha Missense Scores provides precomputed JSON files with AlphaMissense pathogenicity scores for protein variants. Derived from DeepMind's TSV dataset, these JSON files are can be accessed via HTTP queries. This repository allows efficient data retrieval, bypassing the need for local processing of the original TSV files.

Comprehensive Python client for the Uniprot REST API

A Ruby on Rails application for proteomics data analysis

PINT is a new comprehensive web-based system to store, visualize, and query experimental proteomics data obtained under different experimental conditions and projects. PINT provides a very powerful query system through the use of different proteomics-specific data query commands running over both the experimental features and external annotation…

Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicates(Optional, maybe lost some conformation changed structures) and save as "UniprotID-PDBID-ModelID-ChainID.pdb/cif".