Convert SV VCFs to BED, a wrapper for bcftools query
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Updated
Jul 20, 2019 - Python
Convert SV VCFs to BED, a wrapper for bcftools query
CSV to VCF (virtual contact file) generator in Python
Use Azure OpenAI and Azure Machine Learning Studio to create a GPT model with a genomics context. This example allows for ChatGPT-like chat interactivity with variant information (from modified VCF data).
Small GATK alignment and variant calling pipeline using python
Custom command line utility tools to manipulate vcf files
X chromosome regional variation by population
VCFCompare for concordance between two callsets
A python parser for vcf bioinformatics file
Bioinformatics
Variant annotation of vcf file using exac and vep
Code used to discover structural variants, SNP, Indels that were applied to rare variant analysis
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