Collective variables library for molecular simulation and analysis programs

RMD_digging is aimed to provide pre-processing and post-processing tools for the reactive molecular dynamics (ReaxFF) simulations based on MATLAB language, including formatting the reactive force field parameters, statistic anasysis of structures, trajectories and mechanisms and output of the visualization files.

command-line interface configuration files

Windows 11 Installation Guide for Dell Computers. These guides cover updating the BIOS, configuring the BIOS Setup, downloading Windows 11, preparing a Windows 11 Bootable USB with Intel VMD and network preinstallation drivers and preparing Upgrade and Clean Installs on Dell PC which satisfy Microsoft Soft or Hard System Requirements.

VMD plugin with GUI and CLI utilizing HOLE2 without the MDAnalysis learning curve

A plugin for Cinema 4D written in C++ is used to import MikuMikuDance data into Cinema 4D.

LAMMPS input from lammpstutorials.github.io

Completely automatically convert audio to vmd lips data with numerous features, using easy 1-click installer. Allowing you to lipsync your mmd models to any song or speech.

Molecular art

Generate good-looking images and movies with VMD

VMD scripts

CEEMDAN_LSTM is a Python project for decomposition-integration forecasting models based on EMD methods and LSTM.

Variational mode decomposition (VMD) in Python

Config file generator for easier simulations with the Nanoscale Molecular Dynamics (NAMD) software.

vmdAssist is a VMD extension with tools that help us edit or create new structures like nanotube and nanotorus.

TcL/VMD/psfgen/bash scripts for generating MD systems for use with NAMD

Variational Mode Decomposition in Python using the Rust vmd-rs crate

Generate Carbon Nano-Cones using VMD

Chitin builder: A code to build chitin atomistic structures in Visual Molecular Dynamics (VMD)

A script to convert multiple pdb files to a single xyz file using VMD