A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
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Updated
Jun 28, 2024 - Python
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Workflow Description Language developer tools & local runner
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
CLI for interacting with Cromwell servers
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
Configure workflow/pipeline tests using yaml files.
A command-line tool for executing, managing, and querying WDL workflows on Cromwell servers.
Create WDL documentation using Markdown.
[Experimental] Workflow Definition Language (WDL) to CWL
SFN-WDL infrastructure for pipeline execution - a template repository and Terraform module for SFN-WDL based projects
An opinionated Cromwell orchestration manager.
Automatic Input Documentation for WDL workflows
A web-based visualization tool to view (inter and inner) dependencies of WDL workflows.
merge multiple WDLs
Tools to validate and test WDL-based repositories. To be used as part of CI/CD pipelines
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