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IJmacro_MultiScaleCellpose

This is an ImageJ macro that allows to apply Cellpose up to 3 different scales and combine results. This was intended to be used for droplet segmentation at each slice of an image stack but can be applied to segment other objects.

Citations

If you use this macro, please cite this Github repository and the following publications:
Stringer et al. (2021): Cellpose: a generalist algorithm for cellular segmentation
Legland et al. (2016): MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ

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