TEagle v2.12.0 — dialogs, phase navigation, fixed-size genome manager

Post-overhaul refinements from direct use: the tool now carries you to the next step, warnings are proper dialogs you can dismiss, the genome manager shows everything at a fixed comfortable size, and download failures read plainly instead of as a crash. Driven by a user-directed fix loop with per-round triple-reviewer verification.

Added

• The tool moves you to the next phase. "Design primer here" now brings the primer panel up with a busy cue and lands you on it (no more staring at the previous region's stale table); "send to in-silico PCR" and "send to splice" scroll their panel into view.
• Progressive disclosure in the classification banner. The full domain-panel methodology folds behind a Scope and methods toggle; the one-line completeness caveat stays visible, so the card is less crowded without hiding the honest limitation.

Changed

• Warnings and confirmations are dismissable dialogs, centred over the window, instead of a banner wedged above the panels. Errors and warnings persist until closed; confirmations auto-dismiss without stealing focus; the message text is selectable so an accession or seal can be copied.
• Manage genomes is a fixed-size panel sized to show every organism, column and Download button — wide enough that names never truncate, at a comfortable row height that keeps every button fully legible.
• The backend installer opens larger so each component row is comfortably readable.
• Genome downloads retry with exponential backoff (five attempts, 5→10→20→40 s) so a transient NCBI rate-limit or dropped transfer recovers instead of exhausting a short fixed retry.

Fixed

• A genome download or scan that fails now shows one clear warning with the real reason, not a red "unexpected error" crash dialog stacked on top of the status line.
• The light-theme dialog and confidence-chip text is darkened to meet WCAG AA (≥ 4.5:1) against its tinted background.
• The Manage genomes Download/Delete button no longer renders clipped or squeezed — the label is centred at a comfortable height in every row, at every UI scale.
• The genome-manager dialog no longer collapses to a sliver when it rebuilds while open (rescale, add-organism, or a download completing).

Documentation

The complete illustrated TEagle-User-Manual.pdf is attached, refreshed for these changes (the classification banner's Scope-and-methods disclosure, the fixed-size genome manager, the phase-navigation, and the dialog-based messages). Every screenshot across the manual and README is freshly captured at v2.12.0.

Install

Download TEagle-Setup-2.12.0.exe and run it (per-user, no admin). The scientific core is bundled; the optional Dfam/splice/genome-scan backend installs from within the app.

TEagle-Setup-2.12.0.exe SHA-256:
3636ebeae47df3c57fe6c12134f68a8faa65912ae22bceeb7a880fa84f3f27df