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TEagle v3.2.0

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@tunabirgun tunabirgun released this 29 Jul 09:03
· 15 commits to main since this release
v3.2.0
df2ded4

TEagle is now free software under the GNU Affero General Public License, version 3 or later.

Added

  • GFF3 / BED annotation export — verified Sequence Ontology terms, gated on the completeness tier so an evidence-incomplete call degrades to a generic term rather than asserting an unsupported subclass.
  • Self-similarity dot plot in its own resizable window — zoom/pan, selectable direct/inverted mark colours (colour-vision-safe default), export to SVG, PNG, and vector PDF.
  • Five bundled real published TE examples for a first-run that isn't a synthetic null.
  • Optional in-app WSL ViennaRNA primer-QC engine (same ΔG as the in-process route).
  • Pfam panel grows 21 → 30 models — LINE ORF1p/ORF2p-endonuclease, a tyrosine recombinase (new DIRS-group class), the Helitron helicase, and the CACTA / MULE / IS4 transposases.

Changed

  • Relicensed proprietary → AGPL-3.0-or-later.
  • A locus with reverse transcriptase + a tyrosine recombinase and no DDE integrase is now classified as DIRS-group (3.1.0 read it as a LINE).
  • Terminal-repeat (LTR/TIR) lengths measured by X-drop diagonal extension across the whole sequence.

Results may differ from 3.1.0 for DIRS-group calls and terminal-repeat lengths — re-run any record whose classification or terminal-repeat length you have on file.

Assets

  • TEagle-Setup-3.2.0.exe — per-user installer (~40 MiB), no admin required.
    SHA-256 a1c11d85f36d6d55cfd6e6e43d57162cf8f7161d785ce3206f9fc7390df33b5d
  • TEagle-User-Manual.pdf — the complete illustrated user guide.

Full history in CHANGELOG.md.

Assets 4
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