TEagle 3.8.1 is a corrective release for whole-genome landscape integrity, provenance, custom-library behavior, installer cleanup, legacy server mode, and export metadata.
Highlights:
- Computes all-repeat and TE coverage with contig-wide interval unions, so overlaps between repeat names/models are not double-counted. Whole-genome results now separate RepeatMasker repeat name/model (column 10) from class/family (column 11), treat PLE calls as TE, and display independent, non-additive union bars.
- Revalidates cached genomes, chunks, and completed outputs before reuse and finalization; binds the verified genome SHA-256 and length into the provenance seal; and prevents custom-FASTA runs from claiming Dfam evidence.
- Constrains clean-install and uninstall cleanup to the valid TEagle-recorded WSL distribution, with explicit partial-failure handling. Legacy loopback server startup and custom-library pre-run messaging are also corrected.
- Removes the optional Pillow dependency from PNG metadata checks and enforces minimal author-only export metadata.
The version-locked v3.8.0 benchmark evidence remains archived separately at https://doi.org/10.5281/zenodo.21848814. Corrected interval-union semantics can change whole-genome coverage totals relative to 3.8.0.
Uploaded asset: TEagle-Setup-3.8.1.exe only (40,545,260 bytes).
SHA-256: D731BD3066136F6E540F6A10256D328FDB37321613206CBD58CFFA29B2A86375
The Windows installer is unsigned, so SmartScreen may warn or managed devices may block it. Linux-backed workflows use the optional WSL2 environment.