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Releases: ucsd-ccbb/NetColoc

0.1.7

28 Jun 17:19

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  • Removed unused network_localization.py module

Bug fixes

16 Jun 22:58

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  • ipycytoscape added as a dependency

  • ipywidgets added as a dependency

  • Added network_colocalization.sweep_input_pvals() to sweep p-values and scores

  • Added network_colocalization.calculate_network_enrichment() to sweep over z-score thresholds

  • netprop.get_individual_heats_matrix() can take a networkx Graph object and internally call
    netprop.get_normalized_adjancency_matrix(). Documentation updated in both methods to note
    that the resulting matrices can be saved via numpy.save() and retrieved via numpy.load()

  • example_notebooks/ASD_CHD_NetColoc_analysis.ipynb now visualizes hierarchy using
    [ipycytoscape](https://ipycytoscape.readthedocs.io/en/latest]

  • example_notebooks/ASD_CHD_NetColoc_analysis.ipynb updated with a note about using numpy.save()
    and numpy.load() to save and retrieve result from netprop.get_individual_heats_matrix()