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1.0.0

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@roryk roryk released this 10 Jul 15:01
v1.0.0
b02a113
  • Fix for min-length filtering with paired samples. Previously required only one read to be longer, fix requires both.
  • Fix tests for fastqtagcount to use indexed BAM files.
  • Support gzipped cellular barcode files.
  • Support 10x V2 barcoding scheme. Thanks to @tomasgomes for the fix.
  • Re-enable streaming for cellular barcode filtering.
  • Add --umi_matrix option to fasttagcount. This outputs a non-umi-deduped matrix of counts, useful for QC.
  • Support gzipped files for sb_filter, mb_filter and add_uid.
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