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Add an option to output a haplotype GBWT from vg rna with node IDs that match the spliced graph #4430

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jeizenga merged 2 commits into
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output-rna-haps
Oct 30, 2024
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Add an option to output a haplotype GBWT from vg rna with node IDs that match the spliced graph #4430
jeizenga merged 2 commits into
masterfrom
output-rna-haps

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Changelog Entry

To be copied to the draft changelog by merger:

  • vg rna can now output a haplotypes GBWT with node IDs matching the spliced graph

Description

This representation was already used internally, and now it is available as an output option from the command line.

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@adamnovak Does this need to pull in your fix to the Mac CI?

@jeizenga jeizenga merged commit 4ee01a5 into master Oct 30, 2024
@faithokamoto faithokamoto deleted the output-rna-haps branch August 21, 2025 19:01
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