Software

Software

Software available on master and slave nodes

We maintain many specialized software programs specifically for statistical genetics such as:

• R 2.15.2 including all Bioconductor packages
• SAS 9.3
• Open Mx
• Mx
• PLINK
• EIGENSTRAT
• SAGE
• MERLIN
• IMPUTE2
• GENEHUNTER
• PEDCHECK
• PHASE
• PREST
• SOLAR
• FASTLINK
• FREESURFER

Amongst others for software development purposes our group has access to compilers for:

• C/C++
• Perl
• Python/BioPython
• Fortran (f77/f90)
• Java and IMSL libraries

Other open source software needed by users is available upon request.

Other software

Researchers at VIPBG have access to a wide range of software including:

• Microsoft products
• SAS
• SPLUS
• MPLUS
• SPSS
• MATLAB
• Mathematica