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aaronwolen edited this page Apr 8, 2013 · 7 revisions

Proper usage of light

Submitting jobs

A helper script is available for submitting jobs is available for many of the common languages.

R

qR your_r_script.R

MX

qmx your_mx_script

SAS

qsas your_sas_script

Open MX

qRh your_openmx_script.R

All other open resources

qsub your_own_script

To find out more information about how to use PBSPro and submit jobs, check out the user manual here.

Checking jobs

To check queues on cluster:

qstat -q

Nodes and queues configuration

Nodes 2-20 queues on cluster:

Queue Purpose
serial default
workq running converge
mxq running old version mx jobs
openmx running openmx and parallel jobs
express for short and quick jobs not wait in the queue
slowq slow and test jobs on old nodes

Contents

  1. New users
  2. Hardware
  3. Software
  4. Usage
  5. Best practices
  6. File system configuration
  7. FAQ

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