Export to PSI MITAB2.8

Export to PSI-MITAB2.8 of a causal statement

The following table presents the type of information exported from Reactome into the different columns of PSI-MITAB2.8 when a causal statement is defined.

	PSI-MITAB2.8	Reactome data
1	Unique identifier for interactor A
2	Unique identifier for interactor B
3	Alternative identifier for interactor A
4	Alternative identifier for interactor B
5	Aliases for A
6	Aliases for B
7	Interaction detection methods	psi-mi:"MI:0063"(interaction prediction)
8	First author	-
9	Identifier of the publication	pubmed IDs listed in the reaction where causal statement is extracted from
10	NCBI Taxonomy identifier for interactor A	Taxon ID annotated on the source entity
11	NCBI Taxonomy identifier for interactor B	Taxon ID annotated on the target entity
12	Interaction types	psi-mi:"MI:2286"(functional association) for transcription and translation causal statements
13	Source databases	psi-mi:"MI:0467"(reactome)
14	Interaction identifier(s)	Reactome reaction identifier
15	Confidence score	-
16	Complex expansion	-
17	Biological role A	psi-mi:"MI:2274"(regulator)
18	Biological role B	psi-mi:"MI:2275"(regulator target)
19	Experimental role A	psi-mi:"MI:0499"(unspecified role)
20	Experimental role B	psi-mi:"MI:0499"(unspecified role)
21	Interactor type A	Defined based on the schemaClass and referenceType of the entity
22	Interactor type B	Defined based on the schemaClass and referenceType of the entity
23	Xref for interactor A	-
24	Xref for interactor B	-
25	Xref for the interaction	-
26	Annotations for interactor A	compartment
27	Annotations for interactor B	compartment
28	Annotations for the interaction	-
29	NCBI Taxonomy identifier for the host organism	-
30	Parameters of the interaction	-
31	Creation date	Defined by the date the code has been run
32	Update date	-
33	Checksum for interactor A	-
34	Checksum for interactor B	-
35	Checksum for interaction	-
36	negative	-
37	Feature(s) for interactor A	in progress
38	Feature(s) for interactor B	in progress
39	Stoichiometry for interactor A	stoichiometry of source Reactome entity
40	Stoichiometry for interactor B	stoichiometry of target Reactome entity
41	Participant identification method for interactor A	-
42	Participant identification method for interactor B	-
43	Biological effect of interactor A	in progress
44	Biological effect of interactor B	in progress
45	Causal regulatory mechanism	psi-mi:"MI:2247"(transcriptional regulation) for causal statement from transcription reaction psi-mi:"MI:2248"(translation regulation) for causal statement from translation reaction
46	Causal Statement	inferred from Reactome regulation, use of MI term branch 'causal statement'