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@wwood wwood released this 13 Nov 02:00
· 163 commits to main since this release

v0.20.0 / 0.20.1 / 0.20.2

Major new function - Long-read input support (Nanopore >= R10.4.1 or PacBio HiFi recommended), thanks to @thepatientwait.

  • Lyrebird database updated to v0.3.1, improving exclusion of off-target (non-phage) sequences
  • microbial_fraction subcommand renamed to prokaryotic_fraction (old name retained as synonym)
  • More flexible options for specifying genome input in pipe mode
  • appriase mode: Add --stream-inputs
  • GlobDB R226 metapackage released. To use it, decompress it and then specify pipe --metapackage /path/to/GlobDB_r226.metapackage_v1.smpkg rather than setting the environment variable.

Thanks to @AroneyS, @rzhao-2, @EisenRa, @thepatientwait, @dspeth, @Anna-MarieSeelen, @l-gallucci, @ilnamkang and others for contributions and testing.