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@jiyunmaths jiyunmaths released this 08 May 15:46
· 16 commits to master since this release

Include an automated pipeline designed for rapid consensus mutation calling, MuSE.Snakemake. This pipeline automates the generation of consensus somatic mutation calls from NGS data for cancer patient cohorts, starting with BAM or FASTQ files and using a sequence of preprocessing steps followed by the intersection of calls from MuSE 2 and Strelka2. It is optimized for HPC environments, reducing manual task curation and complexity.