v3.0.0

3.0.0 (2024-05-10)

⚠ BREAKING CHANGES

• multiqc is for each reference separately

Features

• multiqc is for each reference separately (1993edf)

Bug Fixes

• added multiqc into report (0f0e7b1)
• multiqc updates (65f7c7b)
• reads module output added into get_outputs (7f4ddf9)
• restructured outputs from step/sample to sample.step (0df7f63)
• restructured outputs from step/sample to sample.step (0834f60)

Performance Improvements

• bumped wrappers (682a375)

v2.3.2

2.3.2 (2024-04-30)

Bug Fixes

• multiqc rule takes config as input (167a228)
• report reorganization (1bef590)
• small changes in schema to prevent bad inputs for resources (824bb55)

Performance Improvements

• bumped reads module (2aadfe8)
• bumped wrappers (26f2cd0)

v2.3.1

2.3.1 (2024-04-25)

Bug Fixes

• mapped bam is not temporary if deduplication is not used (6b4c149)

v2.3.0

2.3.0 (2024-04-25)

Features

• added samtools stats (5d55bbe)
• multiqc (799e3c4)

Bug Fixes

• qualimap produced into bamqc/sample instead of reverse (f6e39e6)

v2.2.0

2.2.0 (2024-04-22)

Features

• fasta paths required instead of dirs for references (a0e3e99)

Performance Improvements

• bumped wrappers (8609298)

v2.1.0

2.1.0 (2024-04-16)

Features

• added module versions configurable (7ebf26e)

v2.0.2

2.0.2 (2024-02-25)

Bug Fixes

• updated schemas (180c5eb)

v2.0.1

2.0.1 (2024-01-26)

Bug Fixes

• qualimap requested for steps defined in config (99c558a)

v2.0.0

2.0.0 (2024-01-26)

⚠ BREAKING CHANGES

• added method specifics in config

Features

• added method specifics in config (c7c1caa)
• expanded schema to dynamically restrict config (3945b13)

v1.0.0

1.0.0 (2024-01-05)

Features

• first version of mapping (d9520ab)