v2.1.3

[v2.1.3] - 2025-03-31

Added

• Script to re-run BRCA sample which crashes as per #44. Closes #44 and #59. Instructions on how to run in Readme.

v2.1.2

[v2.1.2] - 2024-10-16

Fixed

• Only make blank files for CRM

v2.1.1

Live on Wren 07/10/2024

Fixed

• Made blank *_cosmic.csv and *_intersect.txt required as AutoQC markers
• Increased time limit to 24 hours

v2.1.0

Live on Wren 2024-10-03

Added

• SVD files

2.0.4

Added

• Added Changelog
• Added Untracked BED files with lowercase names

Changed

• Removed per tile check for FastQC to reflect AutoQC process - fixes #48

2.0.3

Make referral reasons lower case to work with new samplesheet generator

See #42 for verification

2.0.2

Validate thyroid panel, fixes issue #27
See PR #41 and CC-21-170-GEN for verification

2.0.1

Bug fix for issue #35

See #40 for verification docs

2.0.0

Release for Wren

1. Uses Singularity for executables
2. Variant Caller updated to Pisces_5.2.9.122
3. All virtual panels run using same pipeline version

Validated as part of the Wren change control - CC-20-007-GEN

1.7.10

NOTE - verification ongoing - thyroid bed file needs editing. Okay to use for any other referral type except Thyroid

CRM only

• make new Thyroid panel to match Pan Thyroid panel (minus HRAS as not on CRM capture panel) - issue #27
• reload pipeline variables at end of script to fix issue #28

See #32 for verification docs