Create AML -> myeloid referral list#75
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PatrickWeller
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Tests all okay, no changes to them made. Happy to merge. Works with: https://github.com/AWGL/somatic_enrichment_nextflow/pull/54 |
niamhat
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Feb 4, 2025
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All works. Tests work. Makes csv and runs end to end.
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Makes samples csv as informed if aml referrals
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This Pull Request is linked to a PR in Somatic Enrichment Nextflow and should be code reviewed by the same person.
See: https://github.com/AWGL/somatic_enrichment_nextflow/pull/54
Code Changes
This pull request adds code that creates a sample list csv file of any DNA samples with an aml referral with the word myeloid.
Named: samples_aml_to_myeloid__.csv
E.g.
This file is then ready for the new_referral.sh script to be ran at the end of the somatic_enrichment_nextflow.nf script.
This has been tested with a run with multiple aml samples.