Skip to content

Allow AAP to be non integer #18

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
gregorgorjanc merged 2 commits into from
Oct 22, 2024
Merged

Allow AAP to be non integer #18

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
a9a8b7a
Allow AAP to be non integer
RosCraddock Oct 21, 2024
e1fc6cf
Removed nonInteger argument
RosCraddock Oct 22, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
5 changes: 4 additions & 1 deletion MultiThreadIO.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -64,7 +64,10 @@ def process_input_line(line, startsnp, stopsnp, dtype):
if startsnp is not None :
parts = parts[startsnp : stopsnp + 1] #Offset 1 for id and 2 for id + include stopsnp

data=np.array([int(val) for val in parts], dtype = dtype)
if dtype in [np.float16, np.float32, np.float64] :
data = np.array([val for val in parts], dtype=dtype)
else :
data = np.array([int(val) for val in parts], dtype = dtype)

return (idx, data)

Expand Down
2 changes: 1 addition & 1 deletion Pedigree.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -942,7 +942,7 @@ def readInAAP(self, fileName):
:param fileName: The file path
:type fileName: str
"""
data_list = MultiThreadIO.readLines(fileName, startsnp=None, stopsnp=None, dtype = np.int64)
data_list = MultiThreadIO.readLines(fileName, startsnp=None, stopsnp=None, dtype = np.float32)

# flag of whether adding a default alternative allele probability
default_aap = False
Expand Down