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scx-cli-v0.18.0

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@github-actions github-actions released this 08 Sep 22:18
· 46 commits to main since this release
cedddca

What's Changed

  • convert: stream /raw on h5ad export; read shards by catalog entry (OPT-CONVERT-1, -3) by @nick-youngblut in #510
  • convert: one traversal for HDF5 string ingest, straight into a pre-sized Arrow builder (OPT-CONVERT-2) by @nick-youngblut in #511
  • pyscx: to_anndata obsp= / varp= / varm= slot filters and a raw= opt-out (PR H, REC-8) by @nick-youngblut in #512
  • pyscx: eager to_anndata(var_names=) projects while assembling (PR I, REC-9) by @nick-youngblut in #513
  • pyscx: one QC kernel for every X, plus score_genes(ctrl_genes=) (PR J, REC-11) by @nick-youngblut in #514
  • pyscx: accel docs signature guard, DE backed layer=, and shard-skipping under a row projection (PR J deferred items) by @nick-youngblut in #515
  • accel: the streaming DE kernels take the shared prefetch drivers — row-projection skip + decode-prefetch by @nick-youngblut in #516
  • ops+pyscx+cli+rscx: attach_var_columns — key-joined per-gene columns, in place (PR K, REC-13) by @nick-youngblut in #517
  • engine+pyscx: decode a query's X at the requested dtype — collect(data_dtype=) (REC-15) by @nick-youngblut in #518
  • format+pyscx: the eager-layers decode-loss guard folds over the selected layers by @nick-youngblut in #519
  • chore: bump workspace version to 0.18.0 by @nick-youngblut in #520

Full Changelog: pyscx-v0.17.0...scx-cli-v0.18.0