Adds spectral analysis and improves reproducibility for the S. pombe coherent Raman dataset pub.
New
- Extract and plot mean intensity-vs-wavenumber SRS/epiCARS spectra from lambda scans (
spectral_utils,viz_utils); notebook 01 plots the spectra and saves them as PNG/SVG, with a note on 16-bit SRS saturation.
Reproducibility
- Complete
pyproject.toml(pip install -e .now works reliably), pinnedenvs/dev.yml, documented tested platform, Zenodo download commands, removedsys.pathworkarounds.
Fixes
tqdmmisuse inbatch_export_images,np.trapzNumPy 2 deprecation, PR-template placeholder, stale doc/link cleanup.
Full details in CHANGELOG.md.