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Releases: ArianeMora/scircm
Releases · ArianeMora/scircm
Release list
v1.1.5
Added in groupings for pairs (i.e. if DNA methylation or protein is missing)
v1.1.3 updated to include RNA and methylation only and protein and RNA only
v1.0.5 Added non-coding clusters
Added non-coding gene clusters to unique groups.
| Methylation | RNA-seq | Proteomics | Regulation driver | Regulation Grouping2 |
|------------------|-----------|------------|-----------------------------------------|----------------------|
| Hypomethylation | UP | UP | Methylation decrease | MDE |
| Hypermethylation | DOWN | DOWN | Methylation increase | MDS |
| Hypermethylation | No Change | No Change | Methylation increase | None |
| Hypermethylation | DOWN | No Change | Methylation increase | S_ncRNA |
| Hypermethylation | UP | No Change | Methylation increase & mRNA increase | E_ncRNA |
| No Change | UP | No Change | mRNA increase | E_ncRNA |
| Hypermethylation | DOWN | No Change | Methylation increase & Protein increase | MDS+TMDE |
| Hypermethylation | DOWN | UP | Protein increase | TMDE |
| Hypermethylation | No Change | UP | Protein increase | TMDE |
| Hypermethylation | No Change | DOWN | Protein decrease | TMDS |
| Hypermethylation | UP | UP | mRNA increase | TPDE |
| Hypermethylation | UP | DOWN | mRNA increase & Protein decrease | TPDE+TMDS |
| Hypermethylation | UP | No Change | mRNA increase & Protein decrease | TPDE+TMDS |
| Hypomethylation | No Change | No Change | Methylation decrease | None |
| Hypomethylation | DOWN | No Change | Methylation decrease & mRNA decrease | S_ncRNA |
| Hypomethylation | UP | No Change | Methylation decrease | E_ncRNA |
| No Change | DOWN | No Change | mRNA decrease | S_ncRNA |
| Hypomethylation | UP | No Change | Methylation decrease & Protein decrease | MDE+TMDS |
| Hypomethylation | No Change | UP | Protein increase | TMDE |
| Hypomethylation | UP | DOWN | Protein decrease | TMDS |
| Hypomethylation | No Change | DOWN | Protein decrease | TMDS |
| Hypomethylation | DOWN | DOWN | mRNA decrease | TPDS |
| Hypomethylation | DOWN | UP | mRNA decrease & Protein increase | TPDS+TMDE |
| Hypomethylation | DOWN | No Change | mRNA decrease & Protein increase | TPDS+TMDE |
| No Change | No Change | UP | Protein increase | TMDE |
| No Change | No Change | DOWN | Protein decrease | TMDS |
| No Change | UP | UP | mRNA increase | TPDE |
| No Change | UP | DOWN | mRNA increase & Protein decrease | TPDE+TMDS |
| No Change | UP | No Change | mRNA increase & Protein decrease | TPDE+TMDS |
| No Change | DOWN | DOWN | mRNA decrease | TPDS |
| No Change | DOWN | UP | mRNA decrease & Protein increase | TPDS+TMDE |
| No Change | DOWN | No Change | mRNA decrease & Protein increase | TPDS+TMDE |
| No Change | No Change | No Change | None | None |
First release of scircm
First release to accompany putting our paper on bioRxiv, only up from here :)