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v1.0.5 Added non-coding clusters

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@ArianeMora ArianeMora released this 24 Oct 00:06
· 28 commits to main since this release

Added non-coding gene clusters to unique groups.

| Methylation      | RNA-seq   | Proteomics | Regulation driver                       | Regulation Grouping2 |
|------------------|-----------|------------|-----------------------------------------|----------------------|
| Hypomethylation  | UP        | UP         | Methylation decrease                    | MDE                  |
| Hypermethylation | DOWN      | DOWN       | Methylation increase                    | MDS                  |
| Hypermethylation | No Change | No Change  | Methylation increase                    | None                 |
| Hypermethylation | DOWN      | No Change  | Methylation increase                    | S_ncRNA              |
| Hypermethylation | UP        | No Change  | Methylation increase & mRNA increase    | E_ncRNA              |
| No Change        | UP        | No Change  | mRNA increase                           | E_ncRNA              |
| Hypermethylation | DOWN      | No Change  | Methylation increase & Protein increase | MDS+TMDE             |
| Hypermethylation | DOWN      | UP         | Protein increase                        | TMDE                 |
| Hypermethylation | No Change | UP         | Protein increase                        | TMDE                 |
| Hypermethylation | No Change | DOWN       | Protein decrease                        | TMDS                 |
| Hypermethylation | UP        | UP         | mRNA increase                           | TPDE                 |
| Hypermethylation | UP        | DOWN       | mRNA increase & Protein decrease        | TPDE+TMDS            |
| Hypermethylation | UP        | No Change  | mRNA increase & Protein decrease        | TPDE+TMDS            |
| Hypomethylation  | No Change | No Change  | Methylation decrease                    | None                 |
| Hypomethylation  | DOWN      | No Change  | Methylation decrease & mRNA decrease    | S_ncRNA              |
| Hypomethylation  | UP        | No Change  | Methylation decrease                    | E_ncRNA              |
| No Change        | DOWN      | No Change  | mRNA decrease                           | S_ncRNA              |
| Hypomethylation  | UP        | No Change  | Methylation decrease & Protein decrease | MDE+TMDS             |
| Hypomethylation  | No Change | UP         | Protein increase                        | TMDE                 |
| Hypomethylation  | UP        | DOWN       | Protein decrease                        | TMDS                 |
| Hypomethylation  | No Change | DOWN       | Protein decrease                        | TMDS                 |
| Hypomethylation  | DOWN      | DOWN       | mRNA decrease                           | TPDS                 |
| Hypomethylation  | DOWN      | UP         | mRNA decrease & Protein increase        | TPDS+TMDE            |
| Hypomethylation  | DOWN      | No Change  | mRNA decrease & Protein increase        | TPDS+TMDE            |
| No Change        | No Change | UP         | Protein increase                        | TMDE                 |
| No Change        | No Change | DOWN       | Protein decrease                        | TMDS                 |
| No Change        | UP        | UP         | mRNA increase                           | TPDE                 |
| No Change        | UP        | DOWN       | mRNA increase & Protein decrease        | TPDE+TMDS            |
| No Change        | UP        | No Change  | mRNA increase & Protein decrease        | TPDE+TMDS            |
| No Change        | DOWN      | DOWN       | mRNA decrease                           | TPDS                 |
| No Change        | DOWN      | UP         | mRNA decrease & Protein increase        | TPDS+TMDE            |
| No Change        | DOWN      | No Change  | mRNA decrease & Protein increase        | TPDS+TMDE            |
| No Change        | No Change | No Change  | None                                    | None                 |