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v0.6.0

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@github-actions github-actions released this 08 Jul 15:37
v0.6.0
a93becf

PopGenCore v0.6.0

Highlights

  • A lot of basic code that gets used a lot is optimized and works a lot faster and allocates a lot less
    • examples include: ishom, uniquealleles, countalleles, allelefreq
  • allelematrix code was migrated from PopGen.jl to *Core
  • added baypass to file IO to write a Baypass input file. Baypass files cannot be read because there is no individual data in the matrix
  • isbiallelic now allows monomorphic loci. This was a tough design call, but it made sense that "biallelic" can be interpreted as "at most two alleles"
  • BUGFIX: genocount_expected now treats rearranged alleles as the same genotype (e.g. (1,2) == (2,1) and it didn't before)

Diff since v0.5.1

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