This repository was archived by the owner on Feb 26, 2025. It is now read-only.
v0.1.2
- Split mandatory ccfv2 fibers and cell containing regions combination from ccfv3 / ccfv2 annotation combination
- Add normalization and cell overlapping of Nissl and ISH dataset to match Erö's pipeline.
- Fix glia cell density placement, prevent negative densities.
- Add purely inhibitory regions for Erö's method to match model from 2019.
- Fix masks for cerebellar cortex, molecular and cortex L1 and related test.
- Update Roussel et al.'s pipeline to match the implementation from the paper. Htr3a is now split into vip and lamp5.