0.1

First release of [NiBAχ], the neuro-imaging brain aging chart.

What's Changed

• Add basic setup by @AbdulkadirA in #1
• Add License by @ashishsingh18 in #2
• Adding GUI, data IO, Model & Plotting functionalities by @ashishsingh18 in #7
• Add visualization of normative ranges by @AbdulkadirA in #9
• Add Close and Quit menu and functionality by @ashishsingh18 in #18
• Display data statistics on UI by @ashishsingh18 in #23
• Adding save functionality and UI by @ashishsingh18 in #26
• Add process & view menu, plotting class by @ashishsingh18 in #30
• Add scatter plot of SPARE-AD and SPARE-BA by @AbdulkadirA in #31
• Remove population avg radio button & ok button by @ashishsingh18 in #37
• Auto data unloading by @ashishsingh18 in #38
• Translate MUSE ID into MUSE name and vice-versa by @AbdulkadirA in #43
• Add MUSE dictionary by @AbdulkadirA in #46
• Display loaded data, model names by @ashishsingh18 in #47
• Add ability to load SPARE-* model by @AbdulkadirA in #24
• Fix 50 by @AbdulkadirA in #51
• Select columns based on number of sites by @AbdulkadirA in #53
• Update documentation and PIP requirements by @AbdulkadirA in #54
• Change title of package and application by @AbdulkadirA in #57
• Add out-of-sample harmonization for new sites by @melhemr in #56
• Check existence of column by @AbdulkadirA in #59
• Plot SPARE_BA as brain age gap by @AbdulkadirA in #60
• Add plot of residual MUSE volumes by @AbdulkadirA in #61
• Automate installation of requirements by @AbdulkadirA in #58
• Make ROI combo box searchable by @AbdulkadirA in #65
• Add longitudinal trends for subset of subjects by @melhemr in #64
• Set ROI to DLICV if invalid entry is entered by @AbdulkadirA in #67
• Add all categorical variables as hue option by @AbdulkadirA in #68
• Add plugin toy example by @AbdulkadirA in #70
• Provide console script entry point by @AbdulkadirA in #69
• Add PyGUItemp by @AbdulkadirA in #72
• Add plugin arch based app by @ashishsingh18 in #73
• Define console script entrypoint for QtBrainChart by @AbdulkadirA in #74
• Add SPARE-* plugin by @AbdulkadirA in #75
• Prevent application from crashing because of missing column by @AbdulkadirA in #76
• Add harmonization residual overview fuction to gui by @melhemr in #77
• Add age trends plugin, move plotcanvas to core modules by @ashishsingh18 in #79
• Add model information to Harmonization tab in GUI by @melhemr in #80
• Show bounds of neuroHarmonize model by @AbdulkadirA in #81
• Update plot of harmonization by @AbdulkadirA in #82
• Update harmonization plot by @melhemr in #84
• Remove default tabs 1 and 2 from GUI main window by @melhemr in #85
• Remove customwidget from UI by @melhemr in #87
• Data window changes by @melhemr in #88
• Clean up SPARE-* tab aesthetics by @melhemr in #91
• Update harmonization tab and plot by @melhemr in #90
• Clean up Age Trends plot by @melhemr in #89
• Add searchable combo-boxes to age trends by @AbdulkadirA in #92
• Improve SPARE-* plot by @AbdulkadirA in #86
• Fix refresh of plot by @AbdulkadirA in #95
• Add combobox to select ROI in harmonization tab by @melhemr in #97
• Fixing minor issues with plots and design by @melhemr in #98
• Add save data functionality by @AbdulkadirA in #99
• About dialog & application icon by @ashishsingh18 in #100
• Remove Pyguitemp implementation by @AbdulkadirA in #103
• Correct variable assignment by @melhemr in #101
• Disable creation of table by @AbdulkadirA in #104
• Add data characteristics plugin by @ashishsingh18 in #107
• Show menu bar on Mac computers by @melhemr in #108
• Re-introduce table view by @AbdulkadirA in #109
• Prevent fragmentation of data frame by @AbdulkadirA in #111
• Fix crash due to missing model by @AbdulkadirA in #113
• Fix issue where NaNs appeared in data frame by @AbdulkadirA in #114
• Add data exploration tool by @AbdulkadirA in #115
• Add save, pan, zoom functionality as navigation toolbar to plotcanvas by @ashishsingh18 in #116
• Enable adding SPARE-* scores to data frame by @AbdulkadirA in #119
• Add tab order & fix tab names by @ashishsingh18 in #120
• Specify color palettes for plotting by @melhemr in #123
• Enable termination of SPARE-* computation by @AbdulkadirA in #118
• Add hue to SPARE-* plot by @AbdulkadirA in #128
• Add figure of harmonization parameters by @melhemr in #125
• Add logging capability by @ashishsingh18 in #133
• Declutter harmonization plot by @melhemr in #136
• Add searchable combobox to core.gui by @ashishsingh18 in #137
• Add gif to markdown to display usage by @melhemr in #141
• Remove old BrainChart and plugins folders by @ashishsingh18 in #142
• Rename QtBrainChartGUI to NiBAx by @ashishsingh18 in #143
• Add docs skeleton by @ashishsingh18 in #144
• Change permission of script by @ashishsingh18 in #145
• Update links by @ashishsingh18 in #146
• Add note of under development and update documentation by @AbdulkadirA in #147
• Add basic documentation by @AbdulkadirA in #148
• Deploy *.svg as binary not Git LFS by @AbdulkadirA in #149
• Treat folders as Python packages by @AbdulkadirA in #150
• Update pillow version by @AbdulkadirA in #152
• Add introduction to top level README by @AbdulkadirA in #153
• Update package versions by @AbdulkadirA in #158
• Add *.ui to package data by @AbdulkadirA in #159
• Add more detailed warning of incomplete docs by @AbdulkadirA in #154
• Update numpy version by @AbdulkadirA in #163
• Configure installation with pyproject.toml by @AbdulkadirA in #164
• Pyproject by @AbdulkadirA in #165
• Enable packaging with briefcase by @AbdulkadirA in #166
• Rename data plugin to loadsave by @ashishsingh18 in #162
• Derived Harmonized Volumes in Age Trends module by @melhemr in #167
• Set pandas==1.3.4 for compatibility by @AbdulkadirA in #176
• Remove dependence on index for harmonization by @melhemr in #178
• Adding Unit Tests by @ashishsingh18 in #179
• ROI supertitle for clarity when saving images by @melhemr in #180
• Ignore NaN in max and min functions to create plotting limits by @melhemr in #186
• Fix #185 by @AbdulkadirA in #188
• Dealing with derived volumes in harmonization by @melhemr in #189
• Synthetic datasets/model for testing purposes by @melhemr in #193
• Add ability to load *.csv files by @AbdulkadirA in #187
• Fix loading of data through CLI by @AbdulkadirA in #195
• Set specific version of reportlab package by @AbdulkadirA in #196
• Improve documentation of preprocessing by @AbdulkadirA in #194
• Add ability to load harmonization model with CLI by @AbdulkadirA in #197
• Instructions for creating a conda enviroment with python3.8.8 by @melhemr in #181
• Improve Sphinx build documentation by @AbdulkadirA in #199
• Add testing files to user guide for quickstart by @melhemr in #202
• Remove system-specific file ending by @AbdulkadirA in #203
• Fix buttons when using CLI by @melhemr in #204
• Add hard-coded model covariates to harmonization process if available by @melhemr in #205
• Add analytics site tag by @ashishsingh18 in #207
• Fix version number and github url in about dialog by @ashishsingh18 in #209
• Standardize names of synthetic testing files by @melhemr in #208
• Rename iStaging to NiBAx by @ashishsingh18 in #211
• Add documentation for harmonization plugin by @melhemr in #212
• Remove poetry references from setup for briefcase by @melhemr in #213
• Add short description of some plugins by @AbdulkadirA in #200
• Fix path to manifest file by @AbdulkadirA in #215
• Add license message to about section by @AbdulkadirA in #210
• Add disclaimer and Contact info to readme by @ashishsingh18 in #216
• Add placeholder documentation for one-click installation by @melhemr in #214

New Contributors

• @AbdulkadirA made their first contribution in #1
• @ashishsingh18 made their first contribution in #2
• @melhemr made their first contribution in #56

Full Changelog: https://github.com/CBICA/NiBAx/commits/0.1