Deprecate metabolism observation relation TraitRecords - #3
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Pull request overview
This PR deprecates METPO metabolism OBJECT_PROPERTY TraitRecords that act as generic “microbe → observation” relation carriers, while preserving identifiers/filenames and documenting the deprecation rationale in curation history. It also regenerates the corresponding trait HTML pages and metabolism index page to reflect the deprecated status.
Changes:
- Mark affected metabolism observation-relation TraitRecords as
mapping_status: DEPRECATEDand add aDEPRECATED_PROPERTY_RECORDcuration history entry. - Update generated trait HTML pages to display
DEPRECATEDstatus and show the added curation history entry. - Regenerate the metabolism category page and site index build metadata.
Reviewed changes
Copilot reviewed 44 out of 44 changed files in this pull request and generated no comments.
Show a summary per file
| File | Description |
|---|---|
| pages/traits/metabolism/has_temperature_observation.html | Updates displayed status to DEPRECATED and adds deprecation curation history entry in the generated page. |
| pages/traits/metabolism/has_temperature_delta_observation.html | Updates displayed status to DEPRECATED and adds deprecation curation history entry in the generated page. |
| pages/traits/metabolism/has_range_temperature_observation.html | Updates displayed status to DEPRECATED and adds deprecation curation history entry in the generated page. |
| pages/traits/metabolism/has_range_ph_observation.html | Updates displayed status to DEPRECATED and adds deprecation curation history entry in the generated page. |
| pages/traits/metabolism/has_range_oxygen_observation.html | Updates displayed status to DEPRECATED and adds deprecation curation history entry in the generated page. |
| pages/traits/metabolism/has_range_nacl_observation.html | Updates displayed status to DEPRECATED and adds deprecation curation history entry in the generated page. |
| pages/traits/metabolism/has_ph_observation.html | Updates displayed status to DEPRECATED and adds deprecation curation history entry in the generated page. |
| pages/traits/metabolism/has_ph_delta_observation.html | Updates displayed status to DEPRECATED and adds deprecation curation history entry in the generated page. |
| pages/traits/metabolism/has_oxygen_observation.html | Updates displayed status to DEPRECATED and adds deprecation curation history entry in the generated page. |
| pages/traits/metabolism/has_oxygen_delta_observation.html | Updates displayed status to DEPRECATED and adds deprecation curation history entry in the generated page. |
| pages/traits/metabolism/has_optimum_temperature_observation.html | Updates displayed status to DEPRECATED and adds deprecation curation history entry in the generated page. |
| pages/traits/metabolism/has_optimum_ph_observation.html | Updates displayed status to DEPRECATED and adds deprecation curation history entry in the generated page. |
| pages/traits/metabolism/has_optimum_oxygen_observation.html | Updates displayed status to DEPRECATED and adds deprecation curation history entry in the generated page. |
| pages/traits/metabolism/has_optimum_nacl_observation.html | Updates displayed status to DEPRECATED and adds deprecation curation history entry in the generated page. |
| pages/traits/metabolism/has_observation.html | Updates displayed status to DEPRECATED and adds deprecation curation history entry in the generated page. |
| pages/traits/metabolism/has_nacl_observation.html | Updates displayed status to DEPRECATED and adds deprecation curation history entry in the generated page. |
| pages/traits/metabolism/has_nacl_delta_observation.html | Updates displayed status to DEPRECATED and adds deprecation curation history entry in the generated page. |
| pages/traits/metabolism/has_growth_temperature_observation.html | Updates displayed status to DEPRECATED and adds deprecation curation history entry in the generated page. |
| pages/traits/metabolism/has_growth_ph_observation.html | Updates displayed status to DEPRECATED and adds deprecation curation history entry in the generated page. |
| pages/traits/metabolism/has_growth_oxygen_observation.html | Updates displayed status to DEPRECATED and adds deprecation curation history entry in the generated page. |
| pages/traits/metabolism/has_growth_nacl_observation.html | Updates displayed status to DEPRECATED and adds deprecation curation history entry in the generated page. |
| pages/index.html | Updates generated site build timestamp metadata. |
| pages/category/metabolism.html | Updates generated metabolism index page build metadata (including footer embedding/build info). |
| data/traits/metabolism/has_temperature_observation.yaml | Sets mapping_status to DEPRECATED and adds DEPRECATED_PROPERTY_RECORD curation history entry. |
| data/traits/metabolism/has_temperature_delta_observation.yaml | Sets mapping_status to DEPRECATED and adds DEPRECATED_PROPERTY_RECORD curation history entry. |
| data/traits/metabolism/has_range_temperature_observation.yaml | Sets mapping_status to DEPRECATED and adds DEPRECATED_PROPERTY_RECORD curation history entry. |
| data/traits/metabolism/has_range_ph_observation.yaml | Sets mapping_status to DEPRECATED and adds DEPRECATED_PROPERTY_RECORD curation history entry. |
| data/traits/metabolism/has_range_oxygen_observation.yaml | Sets mapping_status to DEPRECATED and adds DEPRECATED_PROPERTY_RECORD curation history entry. |
| data/traits/metabolism/has_range_nacl_observation.yaml | Sets mapping_status to DEPRECATED and adds DEPRECATED_PROPERTY_RECORD curation history entry. |
| data/traits/metabolism/has_ph_observation.yaml | Sets mapping_status to DEPRECATED and adds DEPRECATED_PROPERTY_RECORD curation history entry. |
| data/traits/metabolism/has_ph_delta_observation.yaml | Sets mapping_status to DEPRECATED and adds DEPRECATED_PROPERTY_RECORD curation history entry. |
| data/traits/metabolism/has_oxygen_observation.yaml | Sets mapping_status to DEPRECATED and adds DEPRECATED_PROPERTY_RECORD curation history entry. |
| data/traits/metabolism/has_oxygen_delta_observation.yaml | Sets mapping_status to DEPRECATED and adds DEPRECATED_PROPERTY_RECORD curation history entry. |
| data/traits/metabolism/has_optimum_temperature_observation.yaml | Sets mapping_status to DEPRECATED and adds DEPRECATED_PROPERTY_RECORD curation history entry. |
| data/traits/metabolism/has_optimum_ph_observation.yaml | Sets mapping_status to DEPRECATED and adds DEPRECATED_PROPERTY_RECORD curation history entry. |
| data/traits/metabolism/has_optimum_oxygen_observation.yaml | Sets mapping_status to DEPRECATED and adds DEPRECATED_PROPERTY_RECORD curation history entry. |
| data/traits/metabolism/has_optimum_nacl_observation.yaml | Sets mapping_status to DEPRECATED and adds DEPRECATED_PROPERTY_RECORD curation history entry. |
| data/traits/metabolism/has_observation.yaml | Sets mapping_status to DEPRECATED and adds DEPRECATED_PROPERTY_RECORD curation history entry. |
| data/traits/metabolism/has_nacl_observation.yaml | Sets mapping_status to DEPRECATED and adds DEPRECATED_PROPERTY_RECORD curation history entry. |
| data/traits/metabolism/has_nacl_delta_observation.yaml | Sets mapping_status to DEPRECATED and adds DEPRECATED_PROPERTY_RECORD curation history entry. |
| data/traits/metabolism/has_growth_temperature_observation.yaml | Sets mapping_status to DEPRECATED and adds DEPRECATED_PROPERTY_RECORD curation history entry. |
| data/traits/metabolism/has_growth_ph_observation.yaml | Sets mapping_status to DEPRECATED and adds DEPRECATED_PROPERTY_RECORD curation history entry. |
| data/traits/metabolism/has_growth_oxygen_observation.yaml | Sets mapping_status to DEPRECATED and adds DEPRECATED_PROPERTY_RECORD curation history entry. |
| data/traits/metabolism/has_growth_nacl_observation.yaml | Sets mapping_status to DEPRECATED and adds DEPRECATED_PROPERTY_RECORD curation history entry. |
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Summary
Scope
Validation