Deprecate metabolism observation relation TraitRecords

data/traits/metabolism/has_growth_nacl_observation.yaml

@@ -3,7 +3,7 @@ label: has growth NaCl observation
 definition: Relates a microbe to a growth NaCl observation.
 trait_category: METABOLISM
 term_kind: OBJECT_PROPERTY
-mapping_status: SEEDED
+mapping_status: DEPRECATED
 parent_traits:
 - METPO:2000506
 domain: https://w3id.org/metpo/1000525
@@ -14,3 +14,10 @@ curation_history:
   action: SEEDED_FROM_METPO
   changes: imported from data/raw/metpo.owl (OBJECT_PROPERTY)
   llm_assisted: false
+- timestamp: '2026-05-10T00:00:00-07:00'
+  curator: codex
+  action: DEPRECATED_PROPERTY_RECORD
+  changes: Deprecated generic observation relation carrier; later replacement should
+    use more specific trait records that combine the relation with measured
+    quantity, growth context, chemical, value bounds, or other entity.
+  llm_assisted: true

data/traits/metabolism/has_growth_oxygen_observation.yaml

@@ -3,7 +3,7 @@ label: has growth oxygen observation
 definition: Relates a microbe to a growth oxygen observation.
 trait_category: METABOLISM
 term_kind: OBJECT_PROPERTY
-mapping_status: SEEDED
+mapping_status: DEPRECATED
 parent_traits:
 - METPO:2000512
 domain: https://w3id.org/metpo/1000525
@@ -14,3 +14,10 @@ curation_history:
   action: SEEDED_FROM_METPO
   changes: imported from data/raw/metpo.owl (OBJECT_PROPERTY)
   llm_assisted: false
+- timestamp: '2026-05-10T00:00:00-07:00'
+  curator: codex
+  action: DEPRECATED_PROPERTY_RECORD
+  changes: Deprecated generic observation relation carrier; later replacement should
+    use more specific trait records that combine the relation with measured
+    quantity, growth context, chemical, value bounds, or other entity.
+  llm_assisted: true

data/traits/metabolism/has_growth_ph_observation.yaml

@@ -3,7 +3,7 @@ label: has growth pH observation
 definition: Relates a microbe to a growth pH observation.
 trait_category: METABOLISM
 term_kind: OBJECT_PROPERTY
-mapping_status: SEEDED
+mapping_status: DEPRECATED
 parent_traits:
 - METPO:2000239
 domain: https://w3id.org/metpo/1000525
@@ -14,3 +14,10 @@ curation_history:
   action: SEEDED_FROM_METPO
   changes: imported from data/raw/metpo.owl (OBJECT_PROPERTY)
   llm_assisted: false
+- timestamp: '2026-05-10T00:00:00-07:00'
+  curator: codex
+  action: DEPRECATED_PROPERTY_RECORD
+  changes: Deprecated generic observation relation carrier; later replacement should
+    use more specific trait records that combine the relation with measured
+    quantity, growth context, chemical, value bounds, or other entity.
+  llm_assisted: true

data/traits/metabolism/has_growth_temperature_observation.yaml

@@ -3,7 +3,7 @@ label: has growth temperature observation
 definition: Relates a microbe to a growth temperature observation.
 trait_category: METABOLISM
 term_kind: OBJECT_PROPERTY
-mapping_status: SEEDED
+mapping_status: DEPRECATED
 parent_traits:
 - METPO:2000052
 domain: https://w3id.org/metpo/1000525
@@ -14,3 +14,10 @@ curation_history:
   action: SEEDED_FROM_METPO
   changes: imported from data/raw/metpo.owl (OBJECT_PROPERTY)
   llm_assisted: false
+- timestamp: '2026-05-10T00:00:00-07:00'
+  curator: codex
+  action: DEPRECATED_PROPERTY_RECORD
+  changes: Deprecated generic observation relation carrier; later replacement should
+    use more specific trait records that combine the relation with measured
+    quantity, growth context, chemical, value bounds, or other entity.
+  llm_assisted: true

data/traits/metabolism/has_nacl_delta_observation.yaml

@@ -3,7 +3,7 @@ label: has NaCl delta observation
 definition: Relates a microbe to a NaCl tolerance breadth (delta) observation.
 trait_category: METABOLISM
 term_kind: OBJECT_PROPERTY
-mapping_status: SEEDED
+mapping_status: DEPRECATED
 parent_traits:
 - METPO:2000506
 domain: https://w3id.org/metpo/1000525
@@ -14,3 +14,10 @@ curation_history:
   action: SEEDED_FROM_METPO
   changes: imported from data/raw/metpo.owl (OBJECT_PROPERTY)
   llm_assisted: false
+- timestamp: '2026-05-10T00:00:00-07:00'
+  curator: codex
+  action: DEPRECATED_PROPERTY_RECORD
+  changes: Deprecated generic observation relation carrier; later replacement should
+    use more specific trait records that combine the relation with measured
+    quantity, growth context, chemical, value bounds, or other entity.
+  llm_assisted: true

data/traits/metabolism/has_nacl_observation.yaml

@@ -3,7 +3,7 @@ label: has NaCl observation
 definition: Relates a microbe to a NaCl observation.
 trait_category: METABOLISM
 term_kind: OBJECT_PROPERTY
-mapping_status: SEEDED
+mapping_status: DEPRECATED
 parent_traits:
 - METPO:2000511
 domain: https://w3id.org/metpo/1000525
@@ -14,3 +14,10 @@ curation_history:
   action: SEEDED_FROM_METPO
   changes: imported from data/raw/metpo.owl (OBJECT_PROPERTY)
   llm_assisted: false
+- timestamp: '2026-05-10T00:00:00-07:00'
+  curator: codex
+  action: DEPRECATED_PROPERTY_RECORD
+  changes: Deprecated generic observation relation carrier; later replacement should
+    use more specific trait records that combine the relation with measured
+    quantity, growth context, chemical, value bounds, or other entity.
+  llm_assisted: true

data/traits/metabolism/has_observation.yaml

@@ -2,7 +2,7 @@ identifier: METPO:2000511
 label: has observation
 trait_category: METABOLISM
 term_kind: OBJECT_PROPERTY
-mapping_status: SEEDED
+mapping_status: DEPRECATED
 domain: https://w3id.org/metpo/1000525
 range_: https://w3id.org/metpo/1001000
 curation_history:
@@ -11,3 +11,10 @@ curation_history:
   action: SEEDED_FROM_METPO
   changes: imported from data/raw/metpo.owl (OBJECT_PROPERTY)
   llm_assisted: false
+- timestamp: '2026-05-10T00:00:00-07:00'
+  curator: codex
+  action: DEPRECATED_PROPERTY_RECORD
+  changes: Deprecated generic observation relation carrier; later replacement should
+    use more specific trait records that combine the relation with measured
+    quantity, growth context, chemical, value bounds, or other entity.
+  llm_assisted: true

data/traits/metabolism/has_optimum_nacl_observation.yaml

@@ -3,7 +3,7 @@ label: has optimum NaCl observation
 definition: Relates a microbe to an optimum NaCl observation.
 trait_category: METABOLISM
 term_kind: OBJECT_PROPERTY
-mapping_status: SEEDED
+mapping_status: DEPRECATED
 parent_traits:
 - METPO:2000506
 domain: https://w3id.org/metpo/1000525
@@ -14,3 +14,10 @@ curation_history:
   action: SEEDED_FROM_METPO
   changes: imported from data/raw/metpo.owl (OBJECT_PROPERTY)
   llm_assisted: false
+- timestamp: '2026-05-10T00:00:00-07:00'
+  curator: codex
+  action: DEPRECATED_PROPERTY_RECORD
+  changes: Deprecated generic observation relation carrier; later replacement should
+    use more specific trait records that combine the relation with measured
+    quantity, growth context, chemical, value bounds, or other entity.
+  llm_assisted: true

data/traits/metabolism/has_optimum_oxygen_observation.yaml

@@ -3,7 +3,7 @@ label: has optimum oxygen observation
 definition: Relates a microbe to an optimum oxygen observation.
 trait_category: METABOLISM
 term_kind: OBJECT_PROPERTY
-mapping_status: SEEDED
+mapping_status: DEPRECATED
 parent_traits:
 - METPO:2000512
 domain: https://w3id.org/metpo/1000525
@@ -14,3 +14,10 @@ curation_history:
   action: SEEDED_FROM_METPO
   changes: imported from data/raw/metpo.owl (OBJECT_PROPERTY)
   llm_assisted: false
+- timestamp: '2026-05-10T00:00:00-07:00'
+  curator: codex
+  action: DEPRECATED_PROPERTY_RECORD
+  changes: Deprecated generic observation relation carrier; later replacement should
+    use more specific trait records that combine the relation with measured
+    quantity, growth context, chemical, value bounds, or other entity.
+  llm_assisted: true

data/traits/metabolism/has_optimum_ph_observation.yaml

@@ -3,7 +3,7 @@ label: has optimum pH observation
 definition: Relates a microbe to an optimum pH observation.
 trait_category: METABOLISM
 term_kind: OBJECT_PROPERTY
-mapping_status: SEEDED
+mapping_status: DEPRECATED
 parent_traits:
 - METPO:2000239
 domain: https://w3id.org/metpo/1000525
@@ -14,3 +14,10 @@ curation_history:
   action: SEEDED_FROM_METPO
   changes: imported from data/raw/metpo.owl (OBJECT_PROPERTY)
   llm_assisted: false
+- timestamp: '2026-05-10T00:00:00-07:00'
+  curator: codex
+  action: DEPRECATED_PROPERTY_RECORD
+  changes: Deprecated generic observation relation carrier; later replacement should
+    use more specific trait records that combine the relation with measured
+    quantity, growth context, chemical, value bounds, or other entity.
+  llm_assisted: true

data/traits/metabolism/has_optimum_temperature_observation.yaml

@@ -3,7 +3,7 @@ label: has optimum temperature observation
 definition: Relates a microbe to an optimum temperature observation.
 trait_category: METABOLISM
 term_kind: OBJECT_PROPERTY
-mapping_status: SEEDED
+mapping_status: DEPRECATED
 parent_traits:
 - METPO:2000052
 domain: https://w3id.org/metpo/1000525
@@ -14,3 +14,10 @@ curation_history:
   action: SEEDED_FROM_METPO
   changes: imported from data/raw/metpo.owl (OBJECT_PROPERTY)
   llm_assisted: false
+- timestamp: '2026-05-10T00:00:00-07:00'
+  curator: codex
+  action: DEPRECATED_PROPERTY_RECORD
+  changes: Deprecated generic observation relation carrier; later replacement should
+    use more specific trait records that combine the relation with measured
+    quantity, growth context, chemical, value bounds, or other entity.
+  llm_assisted: true

data/traits/metabolism/has_oxygen_delta_observation.yaml

@@ -3,7 +3,7 @@ label: has oxygen delta observation
 definition: Relates a microbe to a oxygen tolerance breadth (delta) observation.
 trait_category: METABOLISM
 term_kind: OBJECT_PROPERTY
-mapping_status: SEEDED
+mapping_status: DEPRECATED
 parent_traits:
 - METPO:2000512
 domain: https://w3id.org/metpo/1000525
@@ -14,3 +14,10 @@ curation_history:
   action: SEEDED_FROM_METPO
   changes: imported from data/raw/metpo.owl (OBJECT_PROPERTY)
   llm_assisted: false
+- timestamp: '2026-05-10T00:00:00-07:00'
+  curator: codex
+  action: DEPRECATED_PROPERTY_RECORD
+  changes: Deprecated generic observation relation carrier; later replacement should
+    use more specific trait records that combine the relation with measured
+    quantity, growth context, chemical, value bounds, or other entity.
+  llm_assisted: true

data/traits/metabolism/has_oxygen_observation.yaml

@@ -3,7 +3,7 @@ label: has oxygen observation
 definition: Relates a microbe to an oxygen observation.
 trait_category: METABOLISM
 term_kind: OBJECT_PROPERTY
-mapping_status: SEEDED
+mapping_status: DEPRECATED
 parent_traits:
 - METPO:2000511
 domain: https://w3id.org/metpo/1000525
@@ -14,3 +14,10 @@ curation_history:
   action: SEEDED_FROM_METPO
   changes: imported from data/raw/metpo.owl (OBJECT_PROPERTY)
   llm_assisted: false
+- timestamp: '2026-05-10T00:00:00-07:00'
+  curator: codex
+  action: DEPRECATED_PROPERTY_RECORD
+  changes: Deprecated generic observation relation carrier; later replacement should
+    use more specific trait records that combine the relation with measured
+    quantity, growth context, chemical, value bounds, or other entity.
+  llm_assisted: true

data/traits/metabolism/has_ph_delta_observation.yaml

@@ -3,7 +3,7 @@ label: has pH delta observation
 definition: Relates a microbe to a pH tolerance breadth (delta) observation.
 trait_category: METABOLISM
 term_kind: OBJECT_PROPERTY
-mapping_status: SEEDED
+mapping_status: DEPRECATED
 parent_traits:
 - METPO:2000239
 domain: https://w3id.org/metpo/1000525
@@ -14,3 +14,10 @@ curation_history:
   action: SEEDED_FROM_METPO
   changes: imported from data/raw/metpo.owl (OBJECT_PROPERTY)
   llm_assisted: false
+- timestamp: '2026-05-10T00:00:00-07:00'
+  curator: codex
+  action: DEPRECATED_PROPERTY_RECORD
+  changes: Deprecated generic observation relation carrier; later replacement should
+    use more specific trait records that combine the relation with measured
+    quantity, growth context, chemical, value bounds, or other entity.
+  llm_assisted: true

data/traits/metabolism/has_ph_observation.yaml

@@ -3,7 +3,7 @@ label: has pH observation
 definition: Relates a microbe to a pH observation.
 trait_category: METABOLISM
 term_kind: OBJECT_PROPERTY
-mapping_status: SEEDED
+mapping_status: DEPRECATED
 parent_traits:
 - METPO:2000511
 domain: https://w3id.org/metpo/1000525
@@ -14,3 +14,10 @@ curation_history:
   action: SEEDED_FROM_METPO
   changes: imported from data/raw/metpo.owl (OBJECT_PROPERTY)
   llm_assisted: false
+- timestamp: '2026-05-10T00:00:00-07:00'
+  curator: codex
+  action: DEPRECATED_PROPERTY_RECORD
+  changes: Deprecated generic observation relation carrier; later replacement should
+    use more specific trait records that combine the relation with measured
+    quantity, growth context, chemical, value bounds, or other entity.
+  llm_assisted: true

data/traits/metabolism/has_range_nacl_observation.yaml

@@ -3,7 +3,7 @@ label: has range NaCl observation
 definition: Relates a microbe to a growth NaCl range observation.
 trait_category: METABOLISM
 term_kind: OBJECT_PROPERTY
-mapping_status: SEEDED
+mapping_status: DEPRECATED
 parent_traits:
 - METPO:2000506
 domain: https://w3id.org/metpo/1000525
@@ -14,3 +14,10 @@ curation_history:
   action: SEEDED_FROM_METPO
   changes: imported from data/raw/metpo.owl (OBJECT_PROPERTY)
   llm_assisted: false
+- timestamp: '2026-05-10T00:00:00-07:00'
+  curator: codex
+  action: DEPRECATED_PROPERTY_RECORD
+  changes: Deprecated generic observation relation carrier; later replacement should
+    use more specific trait records that combine the relation with measured
+    quantity, growth context, chemical, value bounds, or other entity.
+  llm_assisted: true

data/traits/metabolism/has_range_oxygen_observation.yaml

@@ -3,7 +3,7 @@ label: has range oxygen observation
 definition: Relates a microbe to a growth oxygen range observation.
 trait_category: METABOLISM
 term_kind: OBJECT_PROPERTY
-mapping_status: SEEDED
+mapping_status: DEPRECATED
 parent_traits:
 - METPO:2000512
 domain: https://w3id.org/metpo/1000525
@@ -14,3 +14,10 @@ curation_history:
   action: SEEDED_FROM_METPO
   changes: imported from data/raw/metpo.owl (OBJECT_PROPERTY)
   llm_assisted: false
+- timestamp: '2026-05-10T00:00:00-07:00'
+  curator: codex
+  action: DEPRECATED_PROPERTY_RECORD
+  changes: Deprecated generic observation relation carrier; later replacement should
+    use more specific trait records that combine the relation with measured
+    quantity, growth context, chemical, value bounds, or other entity.
+  llm_assisted: true

data/traits/metabolism/has_range_ph_observation.yaml

@@ -3,7 +3,7 @@ label: has range pH observation
 definition: Relates a microbe to a growth pH range observation.
 trait_category: METABOLISM
 term_kind: OBJECT_PROPERTY
-mapping_status: SEEDED
+mapping_status: DEPRECATED
 parent_traits:
 - METPO:2000239
 domain: https://w3id.org/metpo/1000525
@@ -14,3 +14,10 @@ curation_history:
   action: SEEDED_FROM_METPO
   changes: imported from data/raw/metpo.owl (OBJECT_PROPERTY)
   llm_assisted: false
+- timestamp: '2026-05-10T00:00:00-07:00'
+  curator: codex
+  action: DEPRECATED_PROPERTY_RECORD
+  changes: Deprecated generic observation relation carrier; later replacement should
+    use more specific trait records that combine the relation with measured
+    quantity, growth context, chemical, value bounds, or other entity.
+  llm_assisted: true

data/traits/metabolism/has_range_temperature_observation.yaml

@@ -3,7 +3,7 @@ label: has range temperature observation
 definition: Relates a microbe to a growth temperature range observation.
 trait_category: METABOLISM
 term_kind: OBJECT_PROPERTY
-mapping_status: SEEDED
+mapping_status: DEPRECATED
 parent_traits:
 - METPO:2000052
 domain: https://w3id.org/metpo/1000525
@@ -14,3 +14,10 @@ curation_history:
   action: SEEDED_FROM_METPO
   changes: imported from data/raw/metpo.owl (OBJECT_PROPERTY)
   llm_assisted: false
+- timestamp: '2026-05-10T00:00:00-07:00'
+  curator: codex
+  action: DEPRECATED_PROPERTY_RECORD
+  changes: Deprecated generic observation relation carrier; later replacement should
+    use more specific trait records that combine the relation with measured
+    quantity, growth context, chemical, value bounds, or other entity.
+  llm_assisted: true

data/traits/metabolism/has_temperature_delta_observation.yaml

@@ -3,7 +3,7 @@ label: has temperature delta observation
 definition: Relates a microbe to a temperature tolerance breadth (delta) observation.
 trait_category: METABOLISM
 term_kind: OBJECT_PROPERTY
-mapping_status: SEEDED
+mapping_status: DEPRECATED
 parent_traits:
 - METPO:2000052
 domain: https://w3id.org/metpo/1000525
@@ -14,3 +14,10 @@ curation_history:
   action: SEEDED_FROM_METPO
   changes: imported from data/raw/metpo.owl (OBJECT_PROPERTY)
   llm_assisted: false
+- timestamp: '2026-05-10T00:00:00-07:00'
+  curator: codex
+  action: DEPRECATED_PROPERTY_RECORD
+  changes: Deprecated generic observation relation carrier; later replacement should
+    use more specific trait records that combine the relation with measured
+    quantity, growth context, chemical, value bounds, or other entity.
+  llm_assisted: true