SPARCALViewer studies v2 — NCCE + OVAR_P5

SPARCALViewer study packages for the NCCE cohort (15 sections) and OVAR_P5. Every self-contained archive contains the current merged SPARCAL SNV matrix, Visium spatial assets, and per-spot UMI coverage. NCCE packages also include preloaded CopyKAT and cell-type profiles; no OVAR_P5 tumor or cell-type annotation was supplied. The accompanying manifests record package checksums and dimensions.

SPARCAL UMI-Dedup Analysis

Complete SPARCALViewer study packs for spatial SNV analysis: 4 datasets × pre-dedup baseline + UMI-dedup categories (merged, germline, somatic, 1000G where applicable). Plus DLPFC sections and cross-caller comparison studies.

SPARCAL example studies

Ready-to-open viewer studies: DLPFC 151507/151669/151673, P4_rep1, P6_rep1. Download a zip, unzip, and drag the .config into the SPARCAL Spatial-SNV Viewer. DLPFC studies include a Ground Truth cortical-layer profile.

DCIS_2_SPARCAL example data

SNV presence matrix (snv_matrix.pkl) for the DCIS_2_SPARCAL example study. Drop it next to DCIS_2_SPARCAL.config. See DCIS_2_SPARCAL/DOWNLOAD_MATRIX.md.