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Changing picard-2.9.0 library for handling fastsq/bam files to the (much lighter) htsjdk-2.24.1 library. Overall release should be much lighter as well
Changing the output of the Demultiplex pipeline so that the demultiplexed fastq files now match the UMI-tools format i.e. READNAME_BARCODE_UMI in each demultiplexed fastq file. The BARCODE being corrected according to the whitelist provided with -c option.
Correcting a bug with certain fastq file only having read names without index information (#11)
