v0.3.17

IMPORTANT: --deepcopy has been deprecated. Deepcopy is enabled by default and can be disabled with --no-deepcopy. --use-singularity and --use-docker are deprecated. Instead, --singularity and --docker can work as flags.

• Deprecated parameters

  • --deepcopy: Deepcopy is enable by default. --no-deepcopy is added to disable it.
  • --use-docker: --docker can work as a flag
  • --use-singularity: --singularity can work as a flag

• New parameters

  • --no-deepcopy: to disable deepcopy
  • --dry-run: Caper creates all temporary files but does not take any action.

• New subcommand

  • debug: an alias of troubleshoot, which is too long to type.

• Bug fixes

  • Fixed all deepcopy-related bugs