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@leepc12 leepc12 released this 11 Aug 03:22
v1.2.0
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Learn about vigilant mode.

Added caper cleanup to clean up outputs of a single workflow.

  • Usage:
    • caper cleanup [METADATA_JSON_FILE]: Define a metadata.json file for the first positional argument.
    • caper cleanup [KEYWORD_TO_FIND_WORKFLOW]: Define a keyword to find a workflow from a running caper server.
  • This DELETEs ALL FILES on a workflow root directory (under key workflowRoot in metadata JSON) written in metadata. Deletion is done in a rm -rf fashion.
  • This action is NOT REVERSIBLE. Use this at your own risk.
  • Add --delete to actually delete all outputs. Otherwise, caper cleanup will just dry-run.

Added caper gcp_monitor to monitor resources of workflows run on Google Clouds.

  • Usage:
    • caper gcp_monitor [METADATA_JSON_FILE]: Define a metadata.json file for the first positional argument.
    • caper gcp_monitor [KEYWORD_TO_FIND_WORKFLOW]: Define a keyword to find a workflow from a running caper server.
  • Output will be either in a TSV format or in a JSON format.
    • TSV: Flatten version (with dot notation) of JSON one.
    • JSON: More detailed.
  • This feature is available for a workflow run with Caper>=1.2.0.
  • Outputs:
    • Task name / shard index / status / ...
    • Instance resource info: cpu, memory, Cromwell-mounted disk.
    • Statistics of resources: mean, std, min, max of each resource (memory, Cromwell-mounted disk's usage, cpu_pct).
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