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@ens-lgil ens-lgil released this 10 Jan 08:52
release/95.0
bf6a763
  • The VEP parser is now more permissive for the GFF files (ID attribute only required for genes and transcripts)
  • Add new option --show_ref_allele to include the allele reference in the VEP default output and the tab output formats
  • Add a warning message when the VEP annotations INFO field hasn't been found/recognised in the VCF input file
  • VEP Docker image:
    • Reduce the size of the VEP Docker image by about 45%.
    • Include the Linkage disequilibrium script in the VEP Docker image, making possible to run the LD plugin
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