Skip to content

Babel v1.18

Pre-release
Pre-release

Choose a tag to compare

@gaurav gaurav released this 21 Jul 21:51
· 194 commits to main since this release
v1.18
ca317d2

What's Changed

  • Increment version to Babel v1.17 by @gaurav in #873
  • Add bounded retry/backoff to TripleStore SPARQL execution by @gaurav in #876
  • Add clique-diff and source-discovery primitives (src/model/) by @gaurav in #877
  • Add source-impact report tool for new Babel data sources (with anatomy/cliques refactor) by @gaurav in #742
  • Add babel-clique-diff: build-vs-build compendium clique diff tool by @gaurav in #885
  • Add MP, kept disjoint from HP, with an xref allowlist and HP/MP taxa by @gaurav in #886
  • Upgraded packages using uv sync --upgrade by @gaurav in #908
  • Update setuptools requirement from >=64 to >=83.0.0 by @dependabot[bot] in #892
  • build(deps-dev): bump snakefmt from 2.0.2 to 2.0.3 by @dependabot[bot] in #881
  • Reorganize developer tools under src/tools/, and split agent instructions into AGENTS.md + scoped files by @gaurav in #896
  • Right-size default SLURM resources from the full babel-1.17 run by @gaurav in #869
  • Moved Project URLs further up in pyproject.toml by @gaurav in #928
  • Export intermediate concords, identifiers, and metadata as Parquet files by @gaurav in #704
  • fix issue #744 by handling malformed NCBIGene source alias field by @hyi in #853
  • Let a new run reuse the PubMed downloads, and stop --continue corrupting recursive wget fetches by @gaurav in #931
  • NCBIGene: pipeline test + synonym-field quoting analysis by @gaurav in #917
  • Type DrugBank foods as biolink:Food, extracts as ComplexMolecularMixture (#828) by @gaurav in #918

Full Changelog: v1.17...v1.18