Babel v1.18
Pre-release
Pre-release
What's Changed
- Increment version to Babel v1.17 by @gaurav in #873
- Add bounded retry/backoff to TripleStore SPARQL execution by @gaurav in #876
- Add clique-diff and source-discovery primitives (src/model/) by @gaurav in #877
- Add source-impact report tool for new Babel data sources (with anatomy/cliques refactor) by @gaurav in #742
- Add babel-clique-diff: build-vs-build compendium clique diff tool by @gaurav in #885
- Add MP, kept disjoint from HP, with an xref allowlist and HP/MP taxa by @gaurav in #886
- Upgraded packages using
uv sync --upgradeby @gaurav in #908 - Update setuptools requirement from >=64 to >=83.0.0 by @dependabot[bot] in #892
- build(deps-dev): bump snakefmt from 2.0.2 to 2.0.3 by @dependabot[bot] in #881
- Reorganize developer tools under src/tools/, and split agent instructions into AGENTS.md + scoped files by @gaurav in #896
- Right-size default SLURM resources from the full babel-1.17 run by @gaurav in #869
- Moved Project URLs further up in pyproject.toml by @gaurav in #928
- Export intermediate concords, identifiers, and metadata as Parquet files by @gaurav in #704
- fix issue #744 by handling malformed NCBIGene source alias field by @hyi in #853
- Let a new run reuse the PubMed downloads, and stop --continue corrupting recursive wget fetches by @gaurav in #931
- NCBIGene: pipeline test + synonym-field quoting analysis by @gaurav in #917
- Type DrugBank foods as biolink:Food, extracts as ComplexMolecularMixture (#828) by @gaurav in #918
Full Changelog: v1.17...v1.18