Fix operator cards db layout in ekomark

src/ekomark/data/db.py

@@ -1,21 +1,17 @@
-"""
-Database tables
-"""
+"""Database tables."""
 
 from banana.data.db import Base
 from sqlalchemy import Boolean, Column, Integer, Text
 
 
 class Operator(Base):  # pylint: disable=too-few-public-methods
-    """
-    Operator cards table
-    """
+    """Operator cards table."""
 
     __tablename__ = "operators"
 
     interpolation_is_log = Column(Text)
     interpolation_polynomial_degree = Column(Integer)
-    xgrid = Column(Text)
+    interpolation_xgrid = Column(Text)
     debug_skip_non_singlet = Column(Boolean)
     debug_skip_singlet = Column(Boolean)
     ev_op_max_order = Column(Integer)

src/ekomark/navigator/navigator.py

@@ -1,3 +1,4 @@
+"""EKO implementation of navigator."""
 import os
 import webbrowser
 
@@ -19,30 +20,30 @@
 
 
 class NavigatorApp(bnav.navigator.NavigatorApp):
-    """
-    Navigator base class holding all elementry operations.
+    """Navigator base class holding all elementry operations.
 
     Parameters
     ----------
-        cfg : dict
-            banana configuration
-        mode : str
-            mode identifier
+    cfg : dict
+        banana configuration
+    mode : str
+        mode identifier
+
     """
 
     myname = "eko"
     table_objects = table_objects
 
     def fill_theories(self, theo, obj):
-        """
-        Collect important information of the theory record.
+        """Collect important information of the theory record.
 
         Parameters
         ----------
-            theo : dict
-                database record
-            obj : dict
-                to be updated pandas record
+        theo : dict
+            database record
+        obj : dict
+            to be updated pandas record
+
         """
         for f in [
             "PTO",
@@ -60,17 +61,17 @@ def fill_theories(self, theo, obj):
         obj["mtThr"] = theo["mt"] * theo["ktThr"]
 
     def fill_operators(self, op, obj):
-        """
-        Collect important information of the operator record.
+        """Collect important information of the operator record.
 
         Parameters
         ----------
-            op : dict
-                database record
-            obj : dict
-                to be updated pandas record
+        op : dict
+            database record
+        obj : dict
+            to be updated pandas record
+
         """
-        xgrid = op["xgrid"]
+        xgrid = op["interpolation_xgrid"]
         obj["xgrid"] = (
             f"{len(xgrid)}pts: "
             + f"{'log' if op['interpolation_is_log'] else 'x'}"
@@ -85,15 +86,15 @@ def fill_operators(self, op, obj):
         obj["time"] = op["time_like"]
 
     def fill_cache(self, cac, obj):
-        """
-        Collect important information of the cache record.
+        """Collect important information of the cache record.
 
         Parameters
         ----------
-            cac : dict
-                database record
-            obj : dict
-                to be updated pandas record
+        cac : dict
+            database record
+        obj : dict
+            to be updated pandas record
+
         """
         vals = cac["result"]["values"]
         q2s = list(vals.keys())
@@ -109,15 +110,15 @@ def fill_cache(self, cac, obj):
             obj[f] = cac[f]
 
     def fill_logs(self, lg, obj):
-        """
-        Collect important information of the log record.
+        """Collect important information of the log record.
 
         Parameters
         ----------
-            lg : dict
-                database record
-            obj : dict
-                to be updated pandas record
+        lg : dict
+            database record
+        obj : dict
+            to be updated pandas record
+
         """
         q2s = lg["log"].q2s
         crash = lg.get("_crash", None)
@@ -132,13 +133,13 @@ def fill_logs(self, lg, obj):
             obj[f] = lg[f]
 
     def check_log(self, doc_hash, perc_thr=1, abs_thr=1e-6):
-        """
-        Check if the log passed the default assertions
+        """Check if the log passed the default assertions.
 
         Parameters
         ----------
-            doc_hash : hash
-                log hash
+        doc_hash : hash
+            log hash
+
         """
         dfds = self.log_as_dfd(doc_hash)
         log = self.get(bnav.l, doc_hash)
@@ -153,13 +154,13 @@ def check_log(self, doc_hash, perc_thr=1, abs_thr=1e-6):
                         print(op, row, sep="\n", end="\n\n")
 
     def plot_pdfs(self, doc_hash):
-        """
-        Plots all PDFs at the final scale.
+        """Plot all PDFs at the final scale.
 
         Parameters
         ----------
-            doc_hash : hash
-                log hash
+        doc_hash : hash
+            log hash
+
         """
         log = self.get(bnav.l, doc_hash)
         dfd = log["log"]
@@ -175,7 +176,6 @@ def plot_pdfs(self, doc_hash):
         print(f"Writing pdf plots to {path}")
 
         with PdfPages(path) as pp:
-
             # print setup
             theory = self.get(bnav.t, log["t_hash"][: self.hash_len])
             ops = self.get(bnav.o, log["o_hash"][: self.hash_len])
@@ -200,13 +200,13 @@ def plot_pdfs(self, doc_hash):
         return path
 
     def display_pdfs(self, doc_hash):
-        """
-        Display PDF generated by ekomark.navigator.navigator.plot_pdfs
+        """Display PDF generated by ekomark.navigator.navigator.plot_pdfs.
 
         Parameters
         ----------
-            doc_hash : hash
-                log hash
+        doc_hash : hash
+            log hash
+
         """
         log = self.get(bnav.l, doc_hash)
         directory = (
@@ -230,11 +230,23 @@ def display_pdfs(self, doc_hash):
 
     @staticmethod
     def is_valid_physical_object(name):
+        """Check if is actual name.
+
+        Parameters
+        ----------
+        name : str
+            name
+
+        Returns
+        -------
+        bool :
+            is actual name?
+
+        """
         return name in br.evol_basis or name in br.flavor_basis_names
 
     def compare_external(self, dfd1, dfd2):
-        """
-        Compare two results in the cache.
+        """Compare two results in the cache.
 
         It's taking two results from external benchmarks and compare them in a
         single table.
@@ -245,6 +257,7 @@ def compare_external(self, dfd1, dfd2):
             if hash the doc_hash of the cache to be loaded
         dfd2 : dict or hash
             if hash the doc_hash of the cache to be loaded
+
         """
         # load json documents
         id1, cache1 = self.load_dfd(dfd1, self.cache_as_dfd)